Sounds like he pissed someone off. That is typical... hire a REALLY HOT prostitute, screw the guy, get pics and video, mail it to him, and threaten to mail it to his wife.
Probably the oldest way to compromise any man in power is to "hook him up", then leverage that relationship for money, influence or intelligence.
The affair was with his biographer Paula Broadwell. Supposedly, she may have had access to some classified information. From what I've heard, neither the White House nor Congress expected or wanted him to resign. Petraeus, however, felt like he let the president, the CIA, his family, and the country down. At least he has enough honor (after getting caught) to step down. It has nothing to do with Libya or any other strategic engagement--just one man's personal failings.
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