If physical proof is there, then physical proof is there. I reconcile it with Christianity by accepting that I don't have all of the answers. In fact, it's kind of arrogant to assume otherwise one way or the other.You and I can get along just fine despite having polarized opinions on certain subjects.
Even many diehard Christians believe in evolution, albeit at the hands of God, but they still believe in evolution. Same academic destination, just two slightly different paths.